Detailed information of SNP:
|
SNP ID:
sf0919896724(Gbrowse)
Chromosome: chr09 Position: 19896724 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.08% | 44.92% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 21.95% | 78.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919896724 | T->C | INTERGENIC | None |