Detailed information of SNP:
|
SNP ID:
sf0919896740(Gbrowse)
Chromosome: chr09 Position: 19896740 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 50.00% | 50.00% |
| All Indica | 784 | 84.82% | 15.18% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 370 | 88.11% | 11.89% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 22.50% | 77.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919896740 | G->A | INTERGENIC | None |