Detailed information of SNP:
|
SNP ID:
sf0919898266(Gbrowse)
Chromosome: chr09 Position: 19898266 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 55.11% | 44.89% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 29.69% | 70.31% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 27.03% | 72.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919898266 | G->A | INTERGENIC | None |