Detailed information of SNP:
|
SNP ID:
sf0919904392(Gbrowse)
Chromosome: chr09 Position: 19904392 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.63% | 34.37% |
| All Indica | 797 | 39.90% | 60.10% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 24.80% | 75.20% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919904392 | T->C | INTERGENIC | None |