Detailed information of SNP:
|
SNP ID:
sf0919905887(Gbrowse)
Chromosome: chr09 Position: 19905887 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.56% | 10.44% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919905887 | G->A | INTERGENIC | None |