Detailed information of SNP:
|
SNP ID:
sf0919908933(Gbrowse)
Chromosome: chr09 Position: 19908933 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 798 | 27.82% | 72.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 7.47% | 92.53% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919908933 | C->T | LOC_Os09g33710(LOC_Os09g33710.1) | INTRON |