Detailed information of SNP:
|
SNP ID:
sf0919909515(Gbrowse)
Chromosome: chr09 Position: 19909515 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 16.67% | 83.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919909515 | A->G | LOC_Os09g33710(LOC_Os09g33710.1) | INTRON |