Detailed information of SNP:
|
SNP ID:
sf0919933238(Gbrowse)
Chromosome: chr09 Position: 19933238 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 70.10% | 29.90% |
| All Indica | 755 | 89.54% | 10.46% |
| All Japonica | 495 | 38.38% | 61.62% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 354 | 89.27% | 10.73% |
| Indica II | 205 | 89.27% | 10.73% |
| Indica Intermediate | 196 | 90.31% | 9.69% |
| Temperate Japonica | 334 | 36.23% | 63.77% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919933238 | G->A | LOC_Os09g33750(LOC_Os09g33750.1) | INTRON |