Detailed information of SNP:
|
SNP ID:
sf0919954754(Gbrowse)
Chromosome: chr09 Position: 19954754 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 27.50% | 72.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919954754 | C->T | INTERGENIC | None |