Detailed information of SNP:
|
SNP ID:
sf0919961489(Gbrowse)
Chromosome: chr09 Position: 19961489 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.93% | 5.07% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919961489 | G->T | LOC_Os09g33810(LOC_Os09g33810.1) | Non-Synonymous SNP |
| sf0919961489 | G->T | LOC_Os09g33810(LOC_Os09g33810.3) | Non-Synonymous SNP |
| sf0919961489 | G->T | LOC_Os09g33810(LOC_Os09g33810.4) | Non-Synonymous SNP |
| sf0919961489 | G->T | LOC_Os09g33810(LOC_Os09g33810.5) | SNPs that introduce initiation codons |
| sf0919961489 | G->T | LOC_Os09g33810(LOC_Os09g33810.2) | Non-Synonymous SNP |