Detailed information of SNP:
|
SNP ID:
sf0919970181(Gbrowse)
Chromosome: chr09 Position: 19970181 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.68% | 8.32% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919970181 | G->A | LOC_Os09g33830(LOC_Os09g33830.1) | INTRON |