Detailed information of SNP:
|
SNP ID:
sf0919976920(Gbrowse)
Chromosome: chr09 Position: 19976920 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.87% | 40.13% |
| All Indica | 795 | 97.23% | 2.77% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 27.50% | 72.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919976920 | A->G | INTERGENIC | None |