Detailed information of SNP:
|
SNP ID:
sf0919996012(Gbrowse)
Chromosome: chr09 Position: 19996012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 91.58% | 8.42% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 30.65% | 69.35% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0919996012 | C->T | INTERGENIC | None |