Detailed information of SNP:
|
SNP ID:
sf0920000154(Gbrowse)
Chromosome: chr09 Position: 20000154 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.79% | 31.21% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 492 | 18.50% | 81.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 331 | 11.18% | 88.82% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920000154 | T->G | INTERGENIC | None |