Detailed information of SNP:
|
SNP ID:
sf0920014434(Gbrowse)
Chromosome: chr09 Position: 20014434 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.29% | 43.71% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 22.50% | 77.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920014434 | G->A | LOC_Os09g33900(LOC_Os09g33900.2) | INTRON |
| sf0920014434 | G->A | LOC_Os09g33900(LOC_Os09g33900.1) | INTRON |