Detailed information of SNP:
|
SNP ID:
sf0920038809(Gbrowse)
Chromosome: chr09 Position: 20038809 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.86% | 47.14% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920038809 | A->G | INTERGENIC | None |