Detailed information of SNP:
|
SNP ID:
sf0920044040(Gbrowse)
Chromosome: chr09 Position: 20044040 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 93.07% | 6.93% |
| All Indica | 765 | 87.71% | 12.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 82.96% | 17.04% |
| Indica II | 202 | 89.60% | 10.40% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920044040 | A->C | LOC_Os09g33960(LOC_Os09g33960.1) | INTRON |