Detailed information of SNP:
|
SNP ID:
sf0920049419(Gbrowse)
Chromosome: chr09 Position: 20049419 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.58% | 29.42% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 495 | 24.24% | 75.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 29.94% | 70.06% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920049419 | A->G | LOC_Os09g33960(LOC_Os09g33960.1) | INTRON |