Detailed information of SNP:
|
SNP ID:
sf0920052040(Gbrowse)
Chromosome: chr09 Position: 20052040 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.65% | 40.35% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 22.50% | 77.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920052040 | C->T | INTERGENIC | None |