Detailed information of SNP:
|
SNP ID:
sf0920069659(Gbrowse)
Chromosome: chr09 Position: 20069659 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.33% | 47.67% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 20.51% | 79.49% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920069659 | T->C | INTERGENIC | None |