Detailed information of SNP:
|
SNP ID:
sf0920085949(Gbrowse)
Chromosome: chr09 Position: 20085949 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.08% | 47.92% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 21.43% | 78.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920085949 | C->T | INTERGENIC | None |