Detailed information of SNP:
|
SNP ID:
sf0920089888(Gbrowse)
Chromosome: chr09 Position: 20089888 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 92.85% | 7.15% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 32.81% | 67.19% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920089888 | C->T | LOC_Os09g34040(LOC_Os09g34040.1) | SNPs that introduce initiation codons |