Detailed information of SNP:
|
SNP ID:
sf0920090568(Gbrowse)
Chromosome: chr09 Position: 20090568 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.60% | 36.40% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 38 | 23.68% | 76.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920090568 | T->A | INTERGENIC | None |