Detailed information of SNP:
|
SNP ID:
sf0920135309(Gbrowse)
Chromosome: chr09 Position: 20135309 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920135309 | A->G | INTERGENIC | None |