Detailed information of SNP:
|
SNP ID:
sf0920140377(Gbrowse)
Chromosome: chr09 Position: 20140377 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 65.77% | 34.23% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 494 | 11.13% | 88.87% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 332 | 12.65% | 87.35% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920140377 | A->T | INTERGENIC | None |