Detailed information of SNP:
|
SNP ID:
sf0920144841(Gbrowse)
Chromosome: chr09 Position: 20144841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.23% | 48.77% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 21.95% | 78.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920144841 | C->T | INTERGENIC | None |