Detailed information of SNP:
|
SNP ID:
sf0920146537(Gbrowse)
Chromosome: chr09 Position: 20146537 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 495 | 11.11% | 88.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 12.57% | 87.43% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920146537 | C->G | LOC_Os09g34130(LOC_Os09g34130.1) | UTR_3_PRIME |