Detailed information of SNP:
|
SNP ID:
sf0920157041(Gbrowse)
Chromosome: chr09 Position: 20157041 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 95.42% | 4.58% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 40 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 31 | 96.77% | 3.23% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920157041 | C->T | LOC_Os09g34140(LOC_Os09g34140.2) | INTRON |