Detailed information of SNP:
|
SNP ID:
sf0920161855(Gbrowse)
Chromosome: chr09 Position: 20161855 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 497 | 11.07% | 88.93% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 24.39% | 75.61% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920161855 | T->C | INTERGENIC | None |