Detailed information of SNP:
|
SNP ID:
sf0920174487(Gbrowse)
Chromosome: chr09 Position: 20174487 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 54.59% | 45.41% |
| All Indica | 798 | 90.73% | 9.27% |
| All Japonica | 446 | 0.67% | 99.33% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 294 | 0.34% | 99.66% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 58 | 3.45% | 96.55% |
| Group VI/Aromatic | 8 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920174487 | T->C | INTERGENIC | None |