Detailed information of SNP:
|
SNP ID:
sf0920175944(Gbrowse)
Chromosome: chr09 Position: 20175944 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.05% | 47.95% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920175944 | T->C | INTERGENIC | None |