Detailed information of SNP:
|
SNP ID:
sf0920176018(Gbrowse)
Chromosome: chr09 Position: 20176018 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 63.96% | 36.04% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 415 | 3.61% | 96.39% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 285 | 4.21% | 95.79% |
| Tropical Japonica | 73 | 1.37% | 98.63% |
| Japonica Intermediate | 57 | 3.51% | 96.49% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920176018 | G->A | INTERGENIC | None |