Detailed information of SNP:
|
SNP ID:
sf0920177352(Gbrowse)
Chromosome: chr09 Position: 20177352 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 62.23% | 37.77% |
| All Indica | 795 | 92.70% | 7.30% |
| All Japonica | 492 | 9.76% | 90.24% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 332 | 10.84% | 89.16% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920177352 | A->G | INTERGENIC | None |