Detailed information of SNP:
|
SNP ID:
sf0920192802(Gbrowse)
Chromosome: chr09 Position: 20192802 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 57.61% | 42.39% |
| All Indica | 792 | 95.58% | 4.42% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 63 | 55.56% | 44.44% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920192802 | T->C | INTERGENIC | None |