Detailed information of SNP:
|
SNP ID:
sf0920192937(Gbrowse)
Chromosome: chr09 Position: 20192937 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1283 | 88.62% | 11.38% |
| All Indica | 664 | 78.31% | 21.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 316 | 84.81% | 15.19% |
| Indica II | 170 | 54.12% | 45.88% |
| Indica Intermediate | 178 | 89.89% | 10.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920192937 | C->T | INTERGENIC | None |