Detailed information of SNP:
|
SNP ID:
sf0920272920(Gbrowse)
Chromosome: chr09 Position: 20272920 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.36% | 44.64% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920272920 | C->T | LOC_Os09g34340(LOC_Os09g34340.1) | UTR_3_PRIME |