Detailed information of SNP:
|
SNP ID:
sf0920281855(Gbrowse)
Chromosome: chr09 Position: 20281855 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 50.22% | 49.78% |
| All Indica | 727 | 88.03% | 11.97% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 349 | 85.10% | 14.90% |
| Indica II | 181 | 89.50% | 10.50% |
| Indica Intermediate | 197 | 91.88% | 8.12% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920281855 | A->T | INTERGENIC | None |