Detailed information of SNP:
|
SNP ID:
sf0920288262(Gbrowse)
Chromosome: chr09 Position: 20288262 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 68.38% | 31.62% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 491 | 18.13% | 81.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 331 | 21.15% | 78.85% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920288262 | T->A | INTERGENIC | None |