Detailed information of SNP:
|
SNP ID:
sf0920291897(Gbrowse)
Chromosome: chr09 Position: 20291897 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 67.69% | 32.31% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 394 | 4.06% | 95.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 265 | 4.15% | 95.85% |
| Tropical Japonica | 78 | 2.56% | 97.44% |
| Japonica Intermediate | 51 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 36 | 55.56% | 44.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920291897 | A->G | INTERGENIC | None |