Detailed information of SNP:
|
SNP ID:
sf0920305181(Gbrowse)
Chromosome: chr09 Position: 20305181 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 51.68% | 48.32% |
| All Indica | 786 | 23.79% | 76.21% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 62 | 3.23% | 96.77% |
| Indica I | 372 | 11.56% | 88.44% |
| Indica II | 208 | 23.08% | 76.92% |
| Indica Intermediate | 206 | 46.60% | 53.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920305181 | T->A | INTERGENIC | None |