Detailed information of SNP:
|
SNP ID:
sf0920306353(Gbrowse)
Chromosome: chr09 Position: 20306353 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 53.69% | 46.31% |
| All Indica | 793 | 84.62% | 15.38% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920306353 | A->G | LOC_Os09g34847(LOC_Os09g34847.2) | UTR_3_PRIME |
| sf0920306353 | A->G | LOC_Os09g34847(LOC_Os09g34847.1) | UTR_3_PRIME |