Detailed information of SNP:
|
SNP ID:
sf0920306424(Gbrowse)
Chromosome: chr09 Position: 20306424 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 53.22% | 46.78% |
| All Indica | 794 | 84.13% | 15.87% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 208 | 61.06% | 38.94% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920306424 | C->T | LOC_Os09g34847(LOC_Os09g34847.2) | UTR_3_PRIME |
| sf0920306424 | C->T | LOC_Os09g34847(LOC_Os09g34847.1) | UTR_3_PRIME |