Detailed information of SNP:
|
SNP ID:
sf0920307029(Gbrowse)
Chromosome: chr09 Position: 20307029 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 50.66% | 49.34% |
| All Indica | 753 | 80.88% | 19.12% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 354 | 94.63% | 5.37% |
| Indica II | 198 | 81.31% | 18.69% |
| Indica Intermediate | 201 | 56.22% | 43.78% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920307029 | A->G | LOC_Os09g34847(LOC_Os09g34847.2) | UTR_3_PRIME |
| sf0920307029 | A->G | LOC_Os09g34847(LOC_Os09g34847.1) | UTR_3_PRIME |