Detailed information of SNP:
|
SNP ID:
sf0920307223(Gbrowse)
Chromosome: chr09 Position: 20307223 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 93.49% | 6.51% |
| All Indica | 794 | 89.29% | 10.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920307223 | T->C | LOC_Os09g34847(LOC_Os09g34847.2) | UTR_3_PRIME |
| sf0920307223 | T->C | LOC_Os09g34847(LOC_Os09g34847.1) | UTR_3_PRIME |