Detailed information of SNP:
|
SNP ID:
sf0920307522(Gbrowse)
Chromosome: chr09 Position: 20307522 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.59% | 6.41% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920307522 | G->C | LOC_Os09g34847(LOC_Os09g34847.2) | UTR_3_PRIME |
| sf0920307522 | G->C | LOC_Os09g34847(LOC_Os09g34847.1) | UTR_3_PRIME |