Detailed information of SNP:
|
SNP ID:
sf0920308960(Gbrowse)
Chromosome: chr09 Position: 20308960 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.03% | 38.97% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920308960 | T->C | INTERGENIC | None |