Detailed information of SNP:
|
SNP ID:
sf0920323638(Gbrowse)
Chromosome: chr09 Position: 20323638 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1202 | 85.36% | 14.64% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 286 | 46.15% | 53.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 182 | 30.22% | 69.78% |
| Tropical Japonica | 58 | 82.76% | 17.24% |
| Japonica Intermediate | 46 | 63.04% | 36.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920323638 | A->G | LOC_Os09g34870(LOC_Os09g34870.1) | INTRON |