Detailed information of SNP:
|
SNP ID:
sf0920348004(Gbrowse)
Chromosome: chr09 Position: 20348004 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1335 | 96.03% | 3.97% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 414 | 87.68% | 12.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 97.56% | 2.44% |
| Tropical Japonica | 73 | 49.32% | 50.68% |
| Japonica Intermediate | 54 | 87.04% | 12.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920348004 | T->C | INTERGENIC | None |