Detailed information of SNP:
|
SNP ID:
sf0920353250(Gbrowse)
Chromosome: chr09 Position: 20353250 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 94.95% | 5.05% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 446 | 87.89% | 12.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 292 | 83.56% | 16.44% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920353250 | A->G | INTERGENIC | None |