Detailed information of SNP:
|
SNP ID:
sf0920359160(Gbrowse)
Chromosome: chr09 Position: 20359160 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 63.95% | 36.05% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 44.44% | 55.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0920359160 | T->G | LOC_Os09g34940(LOC_Os09g34940.1) | INTRON |
| sf0920359160 | T->G | LOC_Os09g34940(LOC_Os09g34940.1) | SNPs that disrupt splice sites |